SRX092580
GSM773479: control Ab ChIPSeq Th1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
control_Ab_ChIPSeq
strain
C57BL/6
tissue
spleen
cell type
primary CD4 T cells
culture condition
Th1
chip antibody
control_Ab
chip antibody vendor
Southern Biotech

Sequenced DNA Library

library_name
GSM773479: control_Ab_ChIPSeq_Th1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6451978
Reads aligned (%)
90.0
Duplicates removed (%)
13.8
Number of peaks
361 (qval < 1E-05)

mm9

Number of total reads
6451978
Reads aligned (%)
89.8
Duplicates removed (%)
14.1
Number of peaks
406 (qval < 1E-05)

Base call quality data from DBCLS SRA