SRX092578
GSM779435: H3K4Me3 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Suspension HeLa cells
cell line
HeLa, cycling
chip antibody
H3K4Me3; polyclonal H3K4Me3 (Abcam ab-8580)

Sequenced DNA Library

library_name
GSM779435: H3K4Me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25914036
Reads aligned (%)
96.4
Duplicates removed (%)
35.3
Number of peaks
25605 (qval < 1E-05)

hg19

Number of total reads
25914036
Reads aligned (%)
96.1
Duplicates removed (%)
35.8
Number of peaks
25686 (qval < 1E-05)

Base call quality data from DBCLS SRA