Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Suspension HeLa cells
cell line
HeLa, cycling
chip antibody
YY1; polyclonal anti-YY1 (sc-1703)

Sequenced DNA Library

library_name
GSM779433: YY1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
32436392
Reads aligned (%)
87.2
Duplicates removed (%)
10.5
Number of peaks
2449 (qval < 1E-05)

hg38

Number of total reads
32436392
Reads aligned (%)
88.9
Duplicates removed (%)
9.3
Number of peaks
2424 (qval < 1E-05)

Base call quality data from DBCLS SRA