Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: THAP11
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX092574
GSM779431: THAP11 ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
THAP11
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
Suspension HeLa cells
cell line
HeLa, cycling
chip antibody
THAP11; polyclonal anti-THAP11 (G4275, {Dejosez, 2008 #99})
Sequenced DNA Library
library_name
GSM779431: THAP11_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
31437286
Reads aligned (%)
41.3
Duplicates removed (%)
44.4
Number of peaks
935 (qval < 1E-05)
hg38
Number of total reads
31437286
Reads aligned (%)
42.6
Duplicates removed (%)
43.1
Number of peaks
814 (qval < 1E-05)
Base call quality data from
DBCLS SRA