SRX092569
GSM779426: HCFC1 N ChIPSeq seq6

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HCFC1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Suspension HeLa cells
cell line
HeLa, cycling
chip antibody
HCFC1, Nterm; polyclonal anti-HCF-1N (961-1011, {Machida, 2009 #109})

Sequenced DNA Library

library_name
GSM779426: HCFC1_N_ChIPSeq_seq6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28917261
Reads aligned (%)
95.0
Duplicates removed (%)
14.6
Number of peaks
3131 (qval < 1E-05)

hg19

Number of total reads
28917261
Reads aligned (%)
94.3
Duplicates removed (%)
15.9
Number of peaks
3134 (qval < 1E-05)

Base call quality data from DBCLS SRA