SRX092568
GSM779425: HCFC1 ChIPSeq seqs1-6

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HCFC1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Suspension HeLa cells
cell line
HeLa, cycling
chip antibody
HCFC1; polyclonal anti-HCF-1C (H12,{Wilson, 1993 #21})

Sequenced DNA Library

library_name
GSM779425: HCFC1_ChIPSeq_seqs1-6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
27632107
Reads aligned (%)
84.8
Duplicates removed (%)
8.3
Number of peaks
4884 (qval < 1E-05)

hg38

Number of total reads
27632107
Reads aligned (%)
86.5
Duplicates removed (%)
7.0
Number of peaks
4809 (qval < 1E-05)

Base call quality data from DBCLS SRA