SRX092474
GSM773996: RUNX1 ChIPSeq Rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Runx1

Cell type

Cell type Class
Blood
Cell type
EML
NA
NA

Attributes by original data submitter

Sample

source_name
EML cells
sequence type
Illumina; single-end;35bp reads
antibody
anti-AML(RUNX1) rabbit polyclonal antibody
vendor
CalBiochem
catalog
PC284
cell type
Lin-SCA+CD34+ cells

Sequenced DNA Library

library_name
GSM773996: RUNX1_ChIPSeq_Rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21027585
Reads aligned (%)
58.5
Duplicates removed (%)
31.0
Number of peaks
9894 (qval < 1E-05)

mm9

Number of total reads
21027585
Reads aligned (%)
58.4
Duplicates removed (%)
31.2
Number of peaks
9944 (qval < 1E-05)

Base call quality data from DBCLS SRA