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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Tcf7
wikigenes
PDBj
CellType: EML
ATCC
MeSH
RIKEN BRC
SRX092472
GSM773994: TCF7 ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Tcf7
Cell type
Cell type Class
Blood
Cell type
EML
NA
NA
Attributes by original data submitter
Sample
source_name
EML cells
sequence type
Illumina; single-end;35bp reads
antibody
TCF7 goat polyclonal antibody TCF1(H18)
vendor
Santa Cruz Biotechnology
catalog
SC8589
cell type
Lin-SCA+CD34+ cells
Sequenced DNA Library
library_name
GSM773994: TCF7_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
20828473
Reads aligned (%)
83.6
Duplicates removed (%)
18.6
Number of peaks
7505 (qval < 1E-05)
mm9
Number of total reads
20828473
Reads aligned (%)
83.4
Duplicates removed (%)
18.8
Number of peaks
7462 (qval < 1E-05)
Base call quality data from
DBCLS SRA