Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line background
LNCaP
genotype/variation
wild type
cell type
prostate adenocarcinoma cells
chip antibody
Anti-Androgen Receptor (AR)
chip antibody vendor
BD Biosciences

Sequenced DNA Library

library_name
GSM775364: LNCaP-AR_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
15274712
Reads aligned (%)
84.8
Duplicates removed (%)
8.1
Number of peaks
703 (qval < 1E-05)

hg38

Number of total reads
15274712
Reads aligned (%)
86.6
Duplicates removed (%)
7.1
Number of peaks
710 (qval < 1E-05)

Base call quality data from DBCLS SRA