Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Lymphoma, B-Cell
MeSH Description
A group of heterogeneous lymphoid tumors generally expressing one or more B-cell antigens or representing malignant transformations of B-lymphocytes.

Attributes by original data submitter

Sample

source_name
B cells
cell line
Cell line derived from Burkitt's lymphoma
passage
Multiple
chip antibody
CTCF
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM782158: BL41_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
35391924
Reads aligned (%)
77.5
Duplicates removed (%)
17.3
Number of peaks
18079 (qval < 1E-05)

hg38

Number of total reads
35391924
Reads aligned (%)
79.5
Duplicates removed (%)
16.0
Number of peaks
17976 (qval < 1E-05)

Base call quality data from DBCLS SRA