Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Lymphoma, B-Cell
MeSH Description
A group of heterogeneous lymphoid tumors generally expressing one or more B-cell antigens or representing malignant transformations of B-lymphocytes.

Attributes by original data submitter

Sample

source_name
B cells
cell line
Cell line derived from Burkitt's lymphoma
passage
Multiple
chip antibody
Normal Rabbit IgG
chip antibody vendor
Cell signaling Technology

Sequenced DNA Library

library_name
GSM782157: BJAB_Rabbit
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
23485907
Reads aligned (%)
91.1
Duplicates removed (%)
14.7
Number of peaks
426 (qval < 1E-05)

hg19

Number of total reads
23485907
Reads aligned (%)
90.3
Duplicates removed (%)
15.6
Number of peaks
695 (qval < 1E-05)

Base call quality data from DBCLS SRA