Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Blood
Cell type
Th2 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete the INTERLEUKINS IL-4; IL-5; IL-6; and IL-10. These cytokines influence B-cell development and antibody production as well as augmenting humoral responses.

Attributes by original data submitter

Sample

source_name
Th2 cells
chip antibody
GATA-3; Antibody vendor: Santa Cruz; Antibody catalog number:sc-22206; Antibody lot number: F1306
cell type
Th2
cell number
100000000

Sequenced DNA Library

library_name
GSM776559: Th2_GATA3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
19332027
Reads aligned (%)
63.4
Duplicates removed (%)
18.2
Number of peaks
10369 (qval < 1E-05)

hg38

Number of total reads
19332027
Reads aligned (%)
64.9
Duplicates removed (%)
17.0
Number of peaks
10228 (qval < 1E-05)

Base call quality data from DBCLS SRA