Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TBX21

Cell type

Cell type Class
Blood
Cell type
Th1 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Attributes by original data submitter

Sample

source_name
Th1 cells
chip antibody
T-bet; Antibody vendor: Lab produced (Szabo et al., Nature 2000).
cell type
Th1
cell number
100000000

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
22310404
Reads aligned (%)
34.6
Duplicates removed (%)
55.2
Number of peaks
7651 (qval < 1E-05)

hg38

Number of total reads
22310404
Reads aligned (%)
35.7
Duplicates removed (%)
54.1
Number of peaks
7630 (qval < 1E-05)

Base call quality data from DBCLS SRA