Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

lab

UChicago

lab description

White - University of Chicago

data type

ChipSeq

data type description

ChIP-Seq

cell

K562

cell organism

human

cell description

leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC

cell karyotype

cancer

cell lineage

mesoderm

cell sex

F

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

control

Control_eGFP-HDAC8

control description

This data represents a control being compared to experiments using antibody eGFP-HDAC8

control

Control_eGFP-HDAC8

control description

This data represents a control being compared to experiments using antibody eGFP-HDAC8

control id

K562/Input/Control_eGFP-HDAC8

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM777647: UChicago_ChipSeq_K562_Input_Control_eGFP-HDAC8

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

32547435

Reads aligned (%)

95.1

Duplicates removed (%)

9.1

Number of peaks

890 (qval < 1E-05)

hg19

Number of total reads

32547435

Reads aligned (%)

94.3

Duplicates removed (%)

10.9

Number of peaks

1181 (qval < 1E-05)