Curated Sample Data


Genome
hg19
Antigen Class
Input control
Antigen
Input control
Cell type Class
Blood
Cell type
K-562

Cell type information


Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by Original Data Submitter


source_name
K562
biomaterial_provider
ATCC
lab
UChicago
lab description
White - University of Chicago
data type
ChipSeq
data type description
ChIP-Seq
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
Control_eGFP-NR4A1
control description
This data represents a control being compared to experiments using antibody eGFP-NR4A1
control
Control_eGFP-NR4A1
control description
This data represents a control being compared to experiments using antibody eGFP-NR4A1
control id
K562/Input/Control_eGFP-NR4A1
replicate
1
replicate description
tier 1

Metadata from Sequence Read Archive

Library Description


library_name
GSM777645: UChicago_ChipSeq_K562_Input_Control_eGFP-NR4A1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
29022091
Reads aligned (%)
95.1
Duplicates removed (%)
4.6
Number of peaks
1088 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA