Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
UChicago
lab description
White - University of Chicago
data type
ChipSeq
data type description
ChIP-Seq
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
eGFP-GATA2
antibody antibody description
Goat polyclonal
antibody target description
GATA2
antibody vendor name
Kevin White
antibody vendor id
(None)
control
Control_eGFP-GATA2
control description
This data represents a control being compared to experiments using antibody eGFP-GATA2
control
Control_eGFP-GATA2
control description
This data represents a control being compared to experiments using antibody eGFP-GATA2
control id
K562/Input/Control_eGFP-GATA2
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM777641: UChicago_ChipSeq_K562_eGFP-GATA2_Control_eGFP-GATA2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
58125323
Reads aligned (%)
87.9
Duplicates removed (%)
8.9
Number of peaks
17776 (qval < 1E-05)

hg38

Number of total reads
58125323
Reads aligned (%)
89.8
Duplicates removed (%)
7.5
Number of peaks
17955 (qval < 1E-05)

Base call quality data from DBCLS SRA