Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC8

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
UChicago
lab description
White - University of Chicago
data type
ChipSeq
data type description
ChIP-Seq
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
antibody
eGFP-HDAC8
antibody antibody description
Goat polyclonal
antibody target description
HDAC8
antibody vendor name
Kevin White
antibody vendor id
(None)
control
Control_eGFP-HDAC8
control description
This data represents a control being compared to experiments using antibody eGFP-HDAC8
control
Control_eGFP-HDAC8
control description
This data represents a control being compared to experiments using antibody eGFP-HDAC8
control id
K562/Input/Control_eGFP-HDAC8
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM777640: UChicago_ChipSeq_K562_eGFP-HDAC8_Control_eGFP-HDAC8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
53421011
Reads aligned (%)
88.5
Duplicates removed (%)
7.9
Number of peaks
1470 (qval < 1E-05)

hg38

Number of total reads
53421011
Reads aligned (%)
90.4
Duplicates removed (%)
6.6
Number of peaks
1263 (qval < 1E-05)

Base call quality data from DBCLS SRA