SRX091998
GSM773477: ChIP-Seq Sample 2 H3+

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
ChIP-Seq_Carrier_EBV-transformed_H3+
genotype/variation
translocation t(8;20)(p12;q11.23) carriers
tissue
whole blood
cell type
EBV-Transformed B lymphocytes
chip antibody
H3+

Sequenced DNA Library

library_name
GSM773477: ChIP-Seq_Sample_2_H3+
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4814578
Reads aligned (%)
95.9
Duplicates removed (%)
12.4
Number of peaks
51 (qval < 1E-05)

hg19

Number of total reads
4814578
Reads aligned (%)
95.1
Duplicates removed (%)
13.2
Number of peaks
63 (qval < 1E-05)

Base call quality data from DBCLS SRA