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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX091997
GSM773476: ChIP-Seq Sample 2 H3K4me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
ChIP-Seq_Carrier_EBV-transformed_H3K4me3
genotype/variation
translocation t(8;20)(p12;q11.23) carriers
tissue
whole blood
cell type
EBV-Transformed B lymphocytes
chip antibody
H3K4me3
Sequenced DNA Library
library_name
GSM773476: ChIP-Seq_Sample_2_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
14158057
Reads aligned (%)
96.2
Duplicates removed (%)
3.8
Number of peaks
249 (qval < 1E-05)
hg19
Number of total reads
14158057
Reads aligned (%)
95.1
Duplicates removed (%)
4.3
Number of peaks
367 (qval < 1E-05)
Base call quality data from
DBCLS SRA