Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T-47D breast cancer cell line
tissue
Breast
cell line
T-47D
malignant status
adenocarcinoma

Sequenced DNA Library

library_name
GSM770764: T47D_PR_ChIP_Replicate2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
30593349
Reads aligned (%)
98.6
Duplicates removed (%)
11.8
Number of peaks
18411 (qval < 1E-05)

hg19

Number of total reads
30593349
Reads aligned (%)
97.7
Duplicates removed (%)
13.4
Number of peaks
18751 (qval < 1E-05)

Base call quality data from DBCLS SRA