SRX091828
GSM770762: T47D PR ChIP Replicate1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T-47D breast cancer cell line
tissue
Breast
cell line
T-47D
malignant status
adenocarcinoma

Sequenced DNA Library

library_name
GSM770762: T47D_PR_ChIP_Replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14494306
Reads aligned (%)
97.8
Duplicates removed (%)
41.5
Number of peaks
8718 (qval < 1E-05)

hg19

Number of total reads
14494306
Reads aligned (%)
97.0
Duplicates removed (%)
43.2
Number of peaks
8668 (qval < 1E-05)

Base call quality data from DBCLS SRA