Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
AB32 PR positive transformed normal breast cell line
tissue
Breast
cell line
AB32
malignant status
normal transformed

Sequenced DNA Library

library_name
GSM770760: AB32_input_DNA_Replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
29394449
Reads aligned (%)
98.9
Duplicates removed (%)
6.4
Number of peaks
1447 (qval < 1E-05)

hg19

Number of total reads
29394449
Reads aligned (%)
97.8
Duplicates removed (%)
8.2
Number of peaks
1547 (qval < 1E-05)

Base call quality data from DBCLS SRA