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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: CD4 CD8 double positive cells
ATCC
MeSH
RIKEN BRC
SRX091683
GSM774302: ThyDP Input sample1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA
Attributes by original data submitter
Sample
source_name
ThyDP
strain
C57BL/6
genetic background
TCRa -/-
cell type
Adult thymic DP (pre-positive selection)
chip antibody
None
Sequenced DNA Library
library_name
GSM774302: ThyDP_Input_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
19906586
Reads aligned (%)
83.2
Duplicates removed (%)
6.7
Number of peaks
663 (qval < 1E-05)
mm9
Number of total reads
19906586
Reads aligned (%)
83.0
Duplicates removed (%)
6.8
Number of peaks
736 (qval < 1E-05)
Base call quality data from
DBCLS SRA