Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
ThyDN3
strain
C57BL/6
genetic background
wildtype
cell type
Adult thymic DN3
chip antibody
None

Sequenced DNA Library

library_name
GSM774301: ThyDN3_Input_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
18361549
Reads aligned (%)
80.7
Duplicates removed (%)
8.5
Number of peaks
725 (qval < 1E-05)

mm9

Number of total reads
18361549
Reads aligned (%)
80.5
Duplicates removed (%)
8.6
Number of peaks
793 (qval < 1E-05)

Base call quality data from DBCLS SRA