Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
ThyDP
strain
C57BL/6
genetic background
TCRa -/-
cell type
Adult thymic DP (pre-positive selection)
chip antibody
GATA3 (Santa cruz sc-268)

Sequenced DNA Library

library_name
GSM774297: ThyDP_GATA3_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
19603771
Reads aligned (%)
60.0
Duplicates removed (%)
16.5
Number of peaks
1268 (qval < 1E-05)

mm9

Number of total reads
19603771
Reads aligned (%)
59.8
Duplicates removed (%)
16.7
Number of peaks
1409 (qval < 1E-05)

Base call quality data from DBCLS SRA