Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Gata3
wikigenes
PDBj
CellType: CD4 CD8 double positive cells
ATCC
MeSH
RIKEN BRC
SRX091678
GSM774297: ThyDP GATA3 sample1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Gata3
Cell type
Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA
Attributes by original data submitter
Sample
source_name
ThyDP
strain
C57BL/6
genetic background
TCRa -/-
cell type
Adult thymic DP (pre-positive selection)
chip antibody
GATA3 (Santa cruz sc-268)
Sequenced DNA Library
library_name
GSM774297: ThyDP_GATA3_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
19603771
Reads aligned (%)
60.0
Duplicates removed (%)
16.5
Number of peaks
1268 (qval < 1E-05)
mm9
Number of total reads
19603771
Reads aligned (%)
59.8
Duplicates removed (%)
16.7
Number of peaks
1409 (qval < 1E-05)
Base call quality data from
DBCLS SRA