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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Spi1
wikigenes
PDBj
CellType: CD4 CD8 double negative cells
ATCC
MeSH
RIKEN BRC
SRX091672
GSM774291: FLDN1 PU.1 sample1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Spi1
Cell type
Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA
Attributes by original data submitter
Sample
source_name
FLDN1
strain
C57BL/6
genetic background
wildtype
cell type
Fetal liver precursor derived DN1
chip antibody
PU.1 (Santa cruz sc-352)
Sequenced DNA Library
library_name
GSM774291: FLDN1_PU.1_sample1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
19068209
Reads aligned (%)
57.8
Duplicates removed (%)
17.1
Number of peaks
29193 (qval < 1E-05)
mm9
Number of total reads
19068209
Reads aligned (%)
57.7
Duplicates removed (%)
17.3
Number of peaks
29175 (qval < 1E-05)
Base call quality data from
DBCLS SRA