Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Placenta
Cell type
Placenta
MeSH Description
A highly vascularized mammalian fetal-maternal organ and major site of transport of oxygen, nutrients, and fetal waste products. It includes a fetal portion (CHORIONIC VILLI) derived from TROPHOBLASTS and a maternal portion (DECIDUA) derived from the uterine ENDOMETRIUM. The placenta produces an array of steroid, protein and peptide hormones (PLACENTAL HORMONES).

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Placenta
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23887
DONOR_AGE
day 108
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0001987

Sequenced DNA Library

library_name
DS17639
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
91761698
Reads aligned (%)
97.5
Duplicates removed (%)
13.0
Number of peaks
112566 (qval < 1E-05)

hg19

Number of total reads
91761698
Reads aligned (%)
97.0
Duplicates removed (%)
14.1
Number of peaks
112178 (qval < 1E-05)

Base call quality data from DBCLS SRA