SRX088973
GSM772567: Inputs pool

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colon cancer cell line
cell line
DLD1
cell type
colon cancer cells input
antibody
none, input

Sequenced DNA Library

library_name
GSM772567: Inputs pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34657625
Reads aligned (%)
97.2
Duplicates removed (%)
3.7
Number of peaks
758 (qval < 1E-05)

hg19

Number of total reads
34657625
Reads aligned (%)
96.4
Duplicates removed (%)
5.1
Number of peaks
1063 (qval < 1E-05)

Base call quality data from DBCLS SRA