SRX088972
GSM772566: DLD1DK

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colon cancer cell line
cell line
DLD1
cell type
colon cancer cells transfected with DKK-1
antibody
anti-V5
vendor
Invitrogen
catalog number
R960-25
lot number
771149

Sequenced DNA Library

library_name
GSM772566: DLD1DK
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36012581
Reads aligned (%)
74.1
Duplicates removed (%)
18.2
Number of peaks
583 (qval < 1E-05)

hg19

Number of total reads
36012581
Reads aligned (%)
73.5
Duplicates removed (%)
19.5
Number of peaks
839 (qval < 1E-05)

Base call quality data from DBCLS SRA