SRX088971
GSM772565: DLD1V

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
colon cancer cell line
cell line
DLD1
cell type
colon cancer cells mock
antibody
anti-V5
vendor
Invitrogen
catalog number
R960-25
lot number
771149

Sequenced DNA Library

library_name
GSM772565: DLD1V
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35269189
Reads aligned (%)
84.0
Duplicates removed (%)
11.5
Number of peaks
732 (qval < 1E-05)

hg19

Number of total reads
35269189
Reads aligned (%)
83.3
Duplicates removed (%)
12.9
Number of peaks
986 (qval < 1E-05)

Base call quality data from DBCLS SRA