SRX088961
ChIP-Seq analysis of H3K27me3 in human Mobilized CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34+
DONOR_ID
RO 01517
DONOR_AGE
year 43
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000837

Sequenced DNA Library

library_name
Lib:RI:20100524:06--ChIP:MA:20100517:06:Mobilized CD34:H3K27Me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22542411
Reads aligned (%)
51.4
Duplicates removed (%)
39.8
Number of peaks
268 (qval < 1E-05)

hg19

Number of total reads
22542411
Reads aligned (%)
51.1
Duplicates removed (%)
40.8
Number of peaks
294 (qval < 1E-05)

Base call quality data from DBCLS SRA