SRX088958
ChIP-Seq analysis of H3K4me1 in human Mobilized CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34+
DONOR_ID
RO 01562
DONOR_AGE
42 years
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000837

Sequenced DNA Library

library_name
Lib:RI:20100603:07--ChIP:MA:20100517:07:Mobilized CD34:H3K4Me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39908143
Reads aligned (%)
96.0
Duplicates removed (%)
13.5
Number of peaks
84659 (qval < 1E-05)

hg19

Number of total reads
39908143
Reads aligned (%)
95.7
Duplicates removed (%)
13.7
Number of peaks
84432 (qval < 1E-05)

Base call quality data from DBCLS SRA