SRX088900
ChIP-Seq analysis of H3K4me1 in human CD25- IL17+ Th17 stim cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

DONOR_HEALTH_STATUS
presumed normal
MOLECULE
genomic DNA
DISEASE
presumed normal
MARKERS
CD4+ T cell
PASSAGE_IF_EXPANDED
NA
CELL_TYPE
CD25- IL17+ Th17 stim
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell
DONOR_ID
Donor 62
BIOMATERIAL_PROVIDER
Dana Farber
DONOR_AGE
NA
sample_term_id
CL_0000492

Sequenced DNA Library

library_name
DNA_Lib 743
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40203505
Reads aligned (%)
95.3
Duplicates removed (%)
12.1
Number of peaks
20086 (qval < 1E-05)

hg19

Number of total reads
40203505
Reads aligned (%)
94.8
Duplicates removed (%)
13.0
Number of peaks
19860 (qval < 1E-05)

Base call quality data from DBCLS SRA