SRX088853
ChIP-Seq analysis of H3K9me3 in human Mobilized CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34+
DONOR_ID
RO 01536
DONOR_AGE
27 years
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000837

Sequenced DNA Library

library_name
DNA_Lib 254
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62292799
Reads aligned (%)
92.5
Duplicates removed (%)
55.9
Number of peaks
3283 (qval < 1E-05)

hg19

Number of total reads
62292799
Reads aligned (%)
89.9
Duplicates removed (%)
62.8
Number of peaks
8984 (qval < 1E-05)

Base call quality data from DBCLS SRA