SRX088777
ChIP-Seq analysis of H3K4me3 in human CD25- CD45RO+ mem cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

DONOR_HEALTH_STATUS
presumed normal
MOLECULE
genomic DNA
DISEASE
presumed normal
MARKERS
CD4+ T cell
PASSAGE_IF_EXPANDED
NA
CELL_TYPE
CD25- CD45RO+ mem
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell
DONOR_ID
Donor 62
BIOMATERIAL_PROVIDER
Dana Farber
DONOR_AGE
NA
sample_term_id
CL_0000897

Sequenced DNA Library

library_name
DNA_Lib 719
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19278076
Reads aligned (%)
98.3
Duplicates removed (%)
9.0
Number of peaks
6992 (qval < 1E-05)

hg19

Number of total reads
19278076
Reads aligned (%)
96.8
Duplicates removed (%)
11.5
Number of peaks
6943 (qval < 1E-05)

Base call quality data from DBCLS SRA