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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX088766
ChIP-Seq analysis of H3K4me1 in human CD25- CD45RA+ naive cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
DONOR_HEALTH_STATUS
presumed normal
MOLECULE
genomic DNA
DISEASE
presumed normal
MARKERS
CD4+ T cell
PASSAGE_IF_EXPANDED
NA
CELL_TYPE
CD25- CD45RA+ naive
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell
DONOR_ID
Donor 62
BIOMATERIAL_PROVIDER
Dana Farber
DONOR_AGE
NA
sample_term_id
CL_0000492
Sequenced DNA Library
library_name
DNA_Lib 727
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
30381654
Reads aligned (%)
98.7
Duplicates removed (%)
7.9
Number of peaks
14351 (qval < 1E-05)
hg19
Number of total reads
30381654
Reads aligned (%)
98.1
Duplicates removed (%)
8.7
Number of peaks
14187 (qval < 1E-05)
Base call quality data from
DBCLS SRA