Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Others
Cell type
EJ-1
Primary Tissue
Urinary Bladder
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Urinary bladder cancer cell line
cell line
EJ
tissue
bladder cancer
chip antibody
H3K27m3 (Millipore; 07-449)

Sequenced DNA Library

library_name
GSM770688: EJ.H3K27m3.ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
18908844
Reads aligned (%)
86.9
Duplicates removed (%)
13.9
Number of peaks
202 (qval < 1E-05)

hg19

Number of total reads
18908844
Reads aligned (%)
86.4
Duplicates removed (%)
14.3
Number of peaks
193 (qval < 1E-05)

Base call quality data from DBCLS SRA