Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

Liver

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

Liver

cell organism

mouse

cell description

Liver

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

Liver/Input/std

labversion

05/7/09 Lane 4

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769034: lab_ChipSeq_Liver_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

46257039

Reads aligned (%)

67.6

Duplicates removed (%)

12.8

Number of peaks

1130 (qval < 1E-05)

mm9

Number of total reads

46257039

Reads aligned (%)

67.4

Duplicates removed (%)

12.8

Number of peaks

1186 (qval < 1E-05)