Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Kidney

Cell type

Kidney

MeSH Description

Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Sample

source_name

Kidney

biomaterial_provider

UW lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

Kidney

cell organism

mouse

cell description

Kidney

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

Kidney/Input/std

labversion

05/07/09 Lane 7

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769033: lab_ChipSeq_Kidney_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

44835780

Reads aligned (%)

58.8

Duplicates removed (%)

6.9

Number of peaks

1037 (qval < 1E-05)

mm9

Number of total reads

44835780

Reads aligned (%)

58.7

Duplicates removed (%)

7.0

Number of peaks

1152 (qval < 1E-05)