Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Cardiovascular

Cell type

Heart

MeSH Description

The hollow, muscular organ that maintains the circulation of the blood.

Sample

source_name

Heart

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

Heart

cell organism

mouse

cell description

Heart

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

Heart/Input/std

labversion

05/07/09 Lane 3

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769032: lab_ChipSeq_Heart_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

39936426

Reads aligned (%)

66.0

Duplicates removed (%)

9.3

Number of peaks

999 (qval < 1E-05)

mm9

Number of total reads

39936426

Reads aligned (%)

65.9

Duplicates removed (%)

9.4

Number of peaks

1123 (qval < 1E-05)