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For mm10
Colocalization
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
SRX085454
GSM769031: lab ChipSeq Spleen H3K4me1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
source_name
Spleen
biomaterial_provider
LICR lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
ChIP-Seq
biomaterial_type
tissue
donor_id
ENCDO956IXV
cell organism
mouse
tissue_type
Spleen
Sex
male
antibody
H3K4me1
antibody antibodydescription
rabbit polyclonal
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
Abcam
antibody vendorid
ab8895
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
Spleen/Input/std
labversion
09/19/10 Lane 8C
replicate
1
replicate description
tier 1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse
Sequenced DNA Library
library_name
GSM769031: lab_ChipSeq_Spleen_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
28204084
Reads aligned (%)
80.6
Duplicates removed (%)
12.4
Number of peaks
3935 (qval < 1E-05)
mm9
Number of total reads
28204084
Reads aligned (%)
80.5
Duplicates removed (%)
12.5
Number of peaks
3938 (qval < 1E-05)
Base call quality data from
DBCLS SRA