Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Kidney

Cell type

Kidney

MeSH Description

Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Sample

source_name

Kidney

biomaterial_provider

UW lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

Kidney

cell organism

mouse

cell description

Kidney

cell sex

M

antibody

H3K4me1

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

antibody vendorname

Abcam

antibody vendorid

ab8895

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

Kidney/Input/std

labversion

05/27/09 Lane 3

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769023: lab_ChipSeq_Kidney_H3K4me1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

33458503

Reads aligned (%)

75.5

Duplicates removed (%)

2.9

Number of peaks

12733 (qval < 1E-05)

mm9

Number of total reads

33458503

Reads aligned (%)

75.4

Duplicates removed (%)

3.0

Number of peaks

12775 (qval < 1E-05)