Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
Cerebellum
biomaterial_provider
LICR lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
ChIP-Seq
cell
Cerebellum
cell organism
mouse
cell description
Cerebellum
cell sex
M
antibody
H3K4me1
antibody antibodydescription
rabbit polyclonal
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
Abcam
antibody vendorid
ab8895
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
Cerebellum/Input/std
labversion
12/09/09 Lane 1
replicate
1
replicate description
tier 1
softwareversion
ELAND
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM769018: lab_ChipSeq_Cerebellum_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
34909537
Reads aligned (%)
81.1
Duplicates removed (%)
5.8
Number of peaks
29304 (qval < 1E-05)

mm9

Number of total reads
34909537
Reads aligned (%)
81.0
Duplicates removed (%)
5.9
Number of peaks
29316 (qval < 1E-05)

Base call quality data from DBCLS SRA