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For mm10
Colocalization
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Kidney
ATCC
MeSH
RIKEN BRC
SRX085439
GSM769016: lab ChipSeq Kidney H3K4me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.
Attributes by original data submitter
Sample
source_name
Kidney
biomaterial_provider
UW lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
ChIP-Seq
cell
Kidney
cell organism
mouse
cell description
Kidney
cell sex
M
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
Kidney/Input/std
labversion
04/16/09 Lane 6
replicate
1
replicate description
tier 1
softwareversion
ELAND
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse
Sequenced DNA Library
library_name
GSM769016: lab_ChipSeq_Kidney_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30552368
Reads aligned (%)
76.8
Duplicates removed (%)
19.8
Number of peaks
33254 (qval < 1E-05)
mm9
Number of total reads
30552368
Reads aligned (%)
76.7
Duplicates removed (%)
19.8
Number of peaks
33289 (qval < 1E-05)
Base call quality data from
DBCLS SRA