Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Lung

Cell type

Lung

MeSH Description

Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Sample

source_name

Lung

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

Lung

cell organism

mouse

cell description

Lung

cell sex

M

antibody

H3K4me1

antibody antibodydescription

rabbit polyclonal

antibody targetdescription

Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.

antibody vendorname

Abcam

antibody vendorid

ab8895

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

Lung/Input/std

labversion

05/27/09 Lane 4

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769013: lab_ChipSeq_Lung_H3K4me1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

36465816

Reads aligned (%)

67.7

Duplicates removed (%)

4.0

Number of peaks

12646 (qval < 1E-05)

mm9

Number of total reads

36465816

Reads aligned (%)

67.7

Duplicates removed (%)

4.1

Number of peaks

12581 (qval < 1E-05)