Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

Bone Marrow Cells

MeSH Description

Cells contained in the bone marrow including fat cells (see ADIPOCYTES); STROMAL CELLS; MEGAKARYOCYTES; and the immediate precursors of most blood cells.

Sample

source_name

BoneMarrow

biomaterial_provider

LICR lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

ChIP-Seq

cell

BoneMarrow

cell organism

mouse

cell description

Bone Marrow

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

BoneMarrow/Input/std

labversion

11/05/09 Lane 3

replicate

1

replicate description

tier 1

softwareversion

ELAND

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM769011: lab_ChipSeq_BoneMarrow_Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

34473446

Reads aligned (%)

66.0

Duplicates removed (%)

8.7

Number of peaks

890 (qval < 1E-05)

mm9

Number of total reads

34473446

Reads aligned (%)

65.9

Duplicates removed (%)

8.7

Number of peaks

964 (qval < 1E-05)