SRX085433
GSM769010: lab ChipSeq ES-Bruce4 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES-Bruce4
biomaterial_provider
University of California, San Diego Transgenic Core and Embryonic Stem Cell
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
ChIP-Seq
cell
ES-Bruce4
cell organism
mouse
cell description
mouse embryonic stem cells
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
E0
age description
Embryonic day 0 (stem cell)
control
std
control description
Standard input signal for most experiments.
controlid
ES-Bruce4/Input/std
labversion
12/04/09 Lane 1
replicate
1
replicate description
tier 1
softwareversion
ELAND
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM769010: lab_ChipSeq_ES-Bruce4_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33137002
Reads aligned (%)
88.8
Duplicates removed (%)
4.4
Number of peaks
1430 (qval < 1E-05)

mm9

Number of total reads
33137002
Reads aligned (%)
88.7
Duplicates removed (%)
4.5
Number of peaks
1461 (qval < 1E-05)

Base call quality data from DBCLS SRA