Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc cells
chip antibody
anti-dCTCF
chip antibody supplier
Generated by the Corces lab. Gerasimova et al. 2007
cell type
Kc167 Drosophila Embryonic Cell line
ecdysone treatment
48 hours

Sequenced DNA Library

library_name
GSM762844: dCTCF_20HE_48hrs_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm3

Number of total reads
39540433
Reads aligned (%)
80.4
Duplicates removed (%)
62.0
Number of peaks
7363 (qval < 1E-05)

dm6

Number of total reads
39540433
Reads aligned (%)
79.8
Duplicates removed (%)
64.3
Number of peaks
6696 (qval < 1E-05)

Base call quality data from DBCLS SRA