Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc cells
chip antibody
anti-dCTCF
chip antibody supplier
Generated by the Corces lab. Gerasimova et al. 2007
cell type
Kc167 Drosophila Embryonic Cell line
ecdysone treatment
3 hours

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
22089961
Reads aligned (%)
62.9
Duplicates removed (%)
74.9
Number of peaks
5340 (qval < 1E-05)

dm6

Number of total reads
22089961
Reads aligned (%)
62.7
Duplicates removed (%)
76.8
Number of peaks
4519 (qval < 1E-05)

Base call quality data from DBCLS SRA