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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Cp190
wikigenes
PDBj
CellType: Kc167
ATCC
MeSH
RIKEN BRC
SRX085400
GSM762838: CP190 20HE 48hrs ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Cp190
Cell type
Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage
Attributes by original data submitter
Sample
source_name
Kc cells
chip antibody
anti-CP190
chip antibody supplier
Generated by the Corces lab. Pai et al. 2004
cell type
Kc167 Drosophila Embryonic Cell line
ecdysone treatment
48 hours
Sequenced DNA Library
library_name
GSM762838: CP190_20HE_48hrs_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
21362116
Reads aligned (%)
46.7
Duplicates removed (%)
60.8
Number of peaks
10932 (qval < 1E-05)
dm3
Number of total reads
21362116
Reads aligned (%)
47.0
Duplicates removed (%)
59.3
Number of peaks
10957 (qval < 1E-05)
Base call quality data from
DBCLS SRA